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A content management system, designed for easy modifications
and management of HPRD, using web interface. The administration
of annotation process and the multi-level review carried out
round the globe is made easy by the implementation of this
tool. This user friendly tool is created using Python and
Zope.
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An application which would comprise the basic sequence data
along with the higher-level, location-based annotations on
the sequence: These annotations would relate the sequence
data to various genomic aspects like SNPs and expression profiling
data such as that derived from DNA microarray and SAGE studies
and also mass spectrometry derived data in order to understand
various post translational modifications. This would add value
to the analysis of the genomic sequence, as it would provide
several different contexts in which to interpret the genomic/transcriptomic/proteomic
data. With this application, when exploring a genomic region,
biologists would be able to interact with the interface in
a richer fashion than is currently possible using simple,
hyperlinked images.
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Is a comprehensive tool used to perform tag-to-gene mapping.
The 10 base pair sequences of each of the SAGE tags, which
are generated experimentally in the lab, are submitted to
the tool as input. The output results in mapping the SAGE
tags to their respective genes by performing an extensive
search across the ‘dbEST’ and ‘non redundant’
database.
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